Quite simply, if you are feeling worse and the effects are seemingly intensifying, you will want to cut back, dramatically. An initial "honeymoon" period is very possible, in fact, I would say that was how I would characterize my experience. During this early phase you are reaping the rewards that commensal organisms provide, without the full consequences of the impending immune stimulation and the associated endotoxin mobilization.
Imagine if each episode of RS supplementation brought about tiny changes in the microbiota until you reached an important threshold wherein some environmental variable changed just enough to allow for a particular species to survive and replicate more vigorously. Unfortunately, that species also had the ability to displace pathogens whose cell walls are composed of highly toxic materials. In a healthy bowel, these lysed cell wall particles would remain in the bowel and the relatively high concentration of commensal organisms would mitigate the effects of these endotoxins.
I am not sure if there is any "turning back." The first step is to discontinue the catalyst for these changes. The second step is to establish what can be done to ameliorate your symptoms. It's hard to offer advice about this with limited information.
Thanks, @Vegas - it has felt for the last ten days like my immune system is doing what it periodically likes to do more of, only more so and for longer without respite. I've read that the malaise is caused by cytokines.
So I should cut back on the RS? It's bad to ride it out? I take your point about the threshold but shouldn't the RS be making my gut healthier and more able to deal with the endotoxins? I had thought the RS supplementation was a long-term thing to supplement what's missing in our modern diet.
I have a feeling I'm missing something...