Human Herpesvirus-6 Reactivation, Mitochondrial Fragmentation, Paper Pub. 4/1/20 - Dr. Prusty

gregh286

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I experienced the same re: sleep. I'll add that I have also had good results from methotrexate and to a lesser degree other DMARDS.

All in all to me there seems to be an autoimmune condition here that results in something being released in the later stages of sleep.

If that is the something in the blood, it may be that which creates mito fission.

I also have go agree.with that 100%. Those last 2 or 3 hours of sleep seem to do the damage. That has been a constant for 8 years for me.
Most definitely its tied to sleep.wake cycle and cortisol release.
Nightmares will always make for a worse cfs morning.
 

ZeroGravitas

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don't think all our cells are really shut down, do you?
Turn of phase. :p;) (Our countries are on economic "shutdown" and 70% or so people are still working...) I of course meant "hypometabolic state". :)

Or are you saying (higher up) that even that would be deadly, in more than half of our cells? I imagine various cell types are more resistant to such signals (immune privileged, or just too important to slow down as much)... But at the extreme end, maybe that's what the most severe ME involves...?

[...] the mitochondria conference, along with learning about his they can be repaired as they recycle.
Yes, mitochondria are continuously splitting and merging to share their mtDNA, hopefully selecting for less damaged copies. Usually recycling/renewing entirely on an order of days. One of my first posts, here, 4 years back was on a Naviaux's metabolic features study thread, about this:
Aubrey de Grey:
Exactly. It is often forgotten that mitochondria are constantly recycled even in non-dividing cells, and thus that the only damage they can possibly accumulate other than as a side-effect of something extramitochondrial is DNA damage, and only then if somehow mutant mtDNA is selected for.
[...]how mitochondria are continually being autophagocytosed (by cell lysosomes) and each last only 2-4 weeks at most [1], perhaps as little as 1-2 days (e.g. in mouse liver cells [2]).
I'm not sure how much the HHV-6 hypometabolic state gets in the way of this mito maintenance...? I think the mitos still merge into smaller bodies, but just don't form the big super-efficient networks. I think no obvious mtDNA damage (or common SNPs) were found in past studies of ME/CFS patient mitochondria...?


So, in addition to stopping the HHV6, maybe we need to work out way down this list and correct what's out of whack.
Simpler to cut off the problem futher upstream, whatever the bistability (trapping) mechanism is, then I'd hope the rest will largely fall into place....

Well, anyway, anti-oxidants are already a major part of many ME/CFS supplement regimes, combatting oxidative stress from reduced SOD2. (Although it's arguable how much we want to combat this, as per Naviaux's "Oxidative Shielding", if a cell's ROS are still protecting it from chemical or pathogen damage.)

Not so sure about the rest of my list (extrated from the paper's abstract). And I've updated that section a little just now and still looking into it a bit. Odd that methylation is *up*, when methylation cycle support is a very common intervention (one that seemed to boost me, to an extent, in part). Maybe its ramped up function is aimed at making more methyl groups to add to and silence DNA from being expressed...?

Certainly the other virus transactivation changes seem to focus on making DNA not RNA. Blocking other viruses (?) but also reducing the cell's ability to make proteins or RNA messengers, or... What else? Repairing cellular machinery, replicating, of course...?
 
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Learner1

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beta-Cell mitochondria are constantly involved in fusion and fission activity that underlies the overall morphology of the organelle. We find that networking activity among mitochondria is capable of distributing a localized green fluorescent protein signal throughout an isolated beta-cell, a beta-cell within an islet, and an INS1 cell. Under noxious conditions, we find that beta-cell mitochondria become fragmented and lose their ability to undergo fusion. Interestingly, manipulations that shift the dynamic balance to favor fusion are able to prevent mitochondrial fragmentation, maintain mitochondrial dynamics, and prevent apoptosis.

From https://www.ncbi.nlm.nih.gov/pubmed/19581419
 

Learner1

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Or are you saying (higher up) that even that would be deadly, in more than half of our cells? I imagine various cell types are more resistant to such signals (immune privileged, or just too important to slow down as much)... But at the extreme end, maybe that's what the most severe ME involves...?
From what I heard, if over half your cells gave bad mitos, you're pretty well screwed. Cancer is a condition of abnormal mitos, with different types of abnormal across the spectrum of cancer types. Neurodegenerative diseases and diabetes are conditions of abnormal mitochondria. And Naviaux's list of cell dangers can damage mitos.

Any can lead to a pitiful death.
Yes, mitochondria are continuously splitting and merging to share their mtDNA, hopefully selecting for less damaged copies. Usually recycling/renewing entirely on an order of days. One of my first posts, here, 4 years back was on a Naviaux's metabolic features study thread, about this:
It seems to vary, but we agree that they recycle over a relatively short period of time rather than living for a long time. Do, the recycling and repair mechanisms offer a chance to improve ones crop of mitos in a reasonable but not immediate timeframe.
I'm not sure how much the HHV-6 hypometabolic state gets in the way of this mito maintenance...? I think the mitos still merge into smaller bodies, but just don't form the big super-efficient networks. I think no obvious mtDNA damage (or common SNPs) were found in past studies of ME/CFS patient mitochondria...?
I think that may vary for each of us, depending on how many other cell dangers we have fallen prey to. For instance, arsenic, can fill up the mitos and actually stop of slow ATP production. It's a fairly common toxin and carcinogen. Other people have other toxins, EMF exposure, infections, iron overload causing Fenton reactions and hydroxyl radicals, peroxynitrites, etc that can impact mitos and widely varying nutrient statuses which affect the ability to repair and operate mitochondria. It's ridiculous to think only one thing is going in here. Or maybe it is in your mitos, but I am positive there have been multiple environmental factors affecting mine. .

Simpler to cut off the problem futher upstream, whatever the bistability (trapping) mechanism is, then I'd hope the rest will largely fall into place....
Well, that would be nice. But you'd have to cut off ALL the above factors upstean, before resources were depleted and too much damage was done.
Well, anyway, anti-oxidants are already a major part of many ME/CFS supplement regimes, combatting oxidative stress from reduced SOD2. (Although it's arguable how much we want to combat this, as per Naviaux's "Oxidative Shielding", if a cell's ROS are still protecting it from chemical or pathogen damage.)

Well, I can re you, having delved pretty deeply into this that simply taking a few antioxidants is not fixing it. Having measured oxidative stress through regular testing throughout my illness and recovery, I have been able, finally, to reduce DNA damage (8OHdG is the marker, but still have incredible oxidative stress causing high lipid peroxides. I have some ideas of why this is happening, but I've beaten back 7 viral and bacterial infections, including EBV abd HHV6, that I didn't feel sick from, only fatigue, and gave find a lot of work on my mitos, and this oxidative stress did not go away.

All of this while I have almost normal energy these days... I think some of my activity is causing even more oxidative stress... I e also found, inadvertently, that increasing my antioxidants in a balanced way across the board, that my energy dramatically increased. So shutting down all the cell dangers and replenishing us important.

Odd that methylation is *up*, when methylation cycle support is a very common intervention (one that seemed to boost me, to an extent, in part). Maybe its ramped up function is aimed at making more methyl groups to add to and silence DNA from being expressed...?
Or maybe it's related to overproduction of peroxynitrites and huge oxidative stress needing more glutathione which can't vbr recycled fast enough.
Certainly the other virus transactivation changes seem to focus on making DNA not RNA. Blocking other viruses (?) but also reducing the cell's ability to make proteins or RNA messengers, or... What else? Repairing cellular machinery, replicating, of course...?
and fixing whatever damage had occurreed anywhere...
 

sb4

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I also have go agree.with that 100%. Those last 2 or 3 hours of sleep seem to do the damage. That has been a constant for 8 years for me.
Most definitely its tied to sleep.wake cycle and cortisol release.
Nightmares will always make for a worse cfs morning.
I may have noticed something similar. Sometimes if I wake up to pee or whatever at say 4-5am then go back to sleep I wake up more refreshed than if I just slept right through.
 

Marylib

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If any of you brainiac's can relate this paper to the one I am posting about hypermetabolism, as opposed to hypometabolism, I will give you a virtual A+ for effort. You get extra credit for dumbing down the explanation - it will have to be pretty dumb! :) For some reason, this one made sense to me, but it was a few months ago and my memory is like a seive:

https://www.mdpi.com/2075-4418/9/3/70/htm
 

Hopeful1976

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I also have go agree.with that 100%. Those last 2 or 3 hours of sleep seem to do the damage. That has been a constant for 8 years for me.
Most definitely its tied to sleep.wake cycle and cortisol release.
Nightmares will always make for a worse cfs morning.
I have this too, and often spoken about it. I can wake at 3 am and feel not too bad, then go back to sleep and wake at 6 or 7 feeling like death. So strange. It is like something is being released when in sleep, at different times...
 

wigglethemouse

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So you're saying it could easily be fluke that no u14 was seen in blood of controls. Hence this study doesn't indicate it as a potential distinctive serum marker for HHV-6 transactivation (or ME/CFS).
He showed in a previous paper that sncRNA-U14 is a marker for HHV-6 transactivation. In ME/CFS vs controls it's an interesting finding that needs replication at higher sample numbers. I asked the Colombia ME/CFS research center team (Lipkin et al) who are expert virus hunters if they have the capability to do this but they replied they have no funding to pursue. They can only work on what they are funded for. It's the age old ME/CFS problem.

I think its just saying that they eliminated the possibility that the virus reached the later stages of replication by confirming that there was no late stage proteins (P41 and U84)... Right? (Or a different bit?)
Found it. It's from Dr. Prusty's 2018 paper
HHV-6 encoded small non-coding RNAs define an intermediate and early stage in viral reactivation
Our studies show lack of complete and productive viral reactivation in U2OS cells that are possibly non-permissive for HHV-6 replication. However we show that viral genome excision in these cells and gain of partial function by viral genome (transactivation) might be clinically significant.
 

Learner1

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The U2OS cell line, originally known as the 2T line, was cultivated from the bone tissue of a fifteen-year-old human female suffering from osteosarcoma. Established in 1964, the original cells were taken from a moderately differentiated sarcoma of the tibia.
What mystifies me with any in vitro cell studies is how we can conclude anything from these severely abnormal cells. (The often used HeLa cells originated from a cervical cancer patient ) the reason these cells came to be used us that they'd grow in glass where non-cancerous cells wouldn't.
 

wigglethemouse

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What mystifies me with any in vitro cell studies is how we can conclude anything from these severely abnormal cells. (The often used HeLa cells originated from a cervical cancer patient ) the reason these cells came to be used us that they'd grow in glass where non-cancerous cells wouldn't.
Dr. Prusty tried to clarify exactly this in some twitter threads. They are model cell lines that are used to control the experiment to try and find mechanisms.
 

Learner1

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I understand, but do normal, non-cancerous cells behave exactly the same way? No one has ever clarified that. Science just goes in using them as that's what they have. I'm not convinced....
 

Rufous McKinney

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If everyone has it, like ebv and only way 5% get ME then something else has to be causing the ME?

My first childhood symptom thats something was wrong was- severe food allergies at One Year Old. Shots. Restrictions. Rashes. Wondering now about what rash might have been: HHV-6.

Kindergarten: sick most of the time with everything. I seem to be able to muster up more memories called SICK than anything else in my childhood.

@raghav so where to get it now?
edit: nevermind, its just broccoli haha.

Last nite, I again could not stomach the Brussel Sprouts. How are they considered food? How does anyone chew this.

And every bite of cauliflower potatoes, I taste the cauliflower.
 

godlovesatrier

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@Rufous McKinney It could be hhv6, but one thing I have noticed wit many others on this forum is subset after subset of this bucket ME diagnosis. I was just looking up the genetic muttions for ME and it was a 20% split on who had what. I would love it if this wasn't the case of course which is why I am drawn to CDR theory. But I am probably wrong.
 

Rufous McKinney

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I think its likely in my case I have multiple viruses, enjoying. afield day in Run Down Me.

I know I"m very Eppstein barr- so meeting HHV-6 recently was: hard to process.
 

raghav

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Here is another paper showing mitochondrial dysfunction by HHV-6B. https://jvi.asm.org/content/82/2/1011…. Our approach and idea are different. You just have to wait to see how others take it. It's too early in any scientific world to find a replication of a given work.

1588460688195.png

https://jvi.asm.org/content/82/2/1011
The U95 Protein of Human Herpesvirus 6B Interacts with Human GRIM-19: Silencing of U95 Expression Reduces Viral Load and Abrogates Loss of Mitochondrial Membrane Potential


Here is an abstract showing mitochondrial dysfunction by HHV-6B.
 
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