There's no point in asking that question until there's proof--or even plausible evidence--that there is such a thing as a "soul".
False. In neural networks, you don't load programs, you let the hardware train from inputs, so the "software" does arise from hardware. If you train two networks with the same set of inputs, hardware variations could lead to completely different connections and weights, forming two different "personalities" so to speak, which will respond to new inputs differently. If you started with two identical networks, but a cosmic ray flipped one bit in one network, you might end up with quite different final networks.
Human brains can't be perfectly modeled (yet), but that doesn't mean that imperfect models or analogies can't have value. Human minds depend on human brain cells, and if you change the operating characteristics of those cells, you will change the mind (thoughts, perceptions, etc) too. If ME changes the operating characteristics of some brain cells, the subject might experience pain sensations, or oversensitivity to inputs, or lethargy and brainfog. That software or neural networks depends on the underlying hardware is a valid result of even a simplistic computer model. Can you argue that the mind is completely unaffected by the hardware? Mind-altering drugs (which change the operating characteristics of cells) is counterevidence.
I agree with all of this.
I get Wabi's point too but generally speaking I do think that it is helpful to have simple analogies for complex issues. For me and I think for others it's helpful to grasp how we have bodily parts including chemicals and we have conscious thoughts and we have unconscious thoughts and they all interplay. It's not identical to a computer but it's pretty darn close and something that makes sense for the average person to better understand mind-body connections.
And, yeah, for me the "soul" is just a human construct in order to try and make sense of life.