Jonathan Edwards
"Gibberish"
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But wouldn't one need to know the trout for that?
Yes. In theory you could stock 5000 ponds each with a pure species of fish without knowing their names and do some fishing and then when you find you have 120 hooks in your bag that catch fish 3986 you can look up in the book and see they are trout. But in reality, to find out how many antibodies you have to a particular antigen you have to work with antibody forming cells (they have antibodies on their surface so will bind to antigen like the individual hooks do). You have to see how many different cells stick to the antigen and then clone their antibody genes from their messenger RNA, and see how many different sequences you have. To do that you need more than just a microarray, you need a big panning plate coated with antigen or something similar.
Knowing how many types of antibody you have to a particular antigen is not that helpful in practice. The main reason for studying it is to try to get a better understanding of how antibodies change or 'affinity mature' over time and how that relates to regulatory pathways.
The real problem, as I think you are suggesting, is how you find any antibodies unless you know what they are going to bind to. This has always been a problem and it is not clear that newer techniques are that much better than the old way of pouring serum on to slices of tissue and looking for binding down a microscope using fluorescent tag dyes. Newer array systems should be helpful but you have to be sure you know how to interpret them.