Hi. You can use websites that interpret the results so you can search your huge data file, although I haven't got mine back yet to describe how to do this, sorry.
Promethease is popular.
There's also research grade software here, you can use for a trial so for a limited time it's free:
Enlis
For a much easier to understand automated report, that's of course nowhere near as useful as inputting data manually, but is presented in a clear cut manner for a limited set of diseases you can buy these apps. Just search the website and see what they look for.
Sequencing.com
Hope that helps a bit, and I'll use them myself once I get my result I'm sure and tell you how I got on.