This does look like an important piece in the puzzle, it's nice to have some worthwhile new science to chew over, feels like it's been a while...(Dr Singh's patent stuff was good but not published yet and thin on the detail...).
A bunch of interesting possibilities open up. I must admit, I was going straight for that whole geographic explanation thing until omerbasket pointed out that it doesn't appear to fit the facts of XMRV testing at all. I was reminded of the "iron curtain" across Europe for two broad subtypes of mice genetics (do I remember right?) as mentioned at the 1st International XMRV Workshop.
Even though it looks like that geographic thing doesn't quite work, I'm still wondering if it might still play a part. All the PCR testing is only looking for particular sequences which are considered characteristic for XMRV, so if the WPI's tests were all looking at sequences that are preserved across various P and X MLV's they could pick up various different sub-types. Indeed, remember the WPI have refined their testing and increased the positives found since the Lombardi study, so they may well now be picking up more of the P-MLV variants that Lo/Alter found as well, and calling them all "XMRV". Pretty much all the positive evidence that omerbasket is talking about comes from the WPI ultimately of course. And for the rest, well one would have to go right down to the detail of the primer sets used etc in order to answer whether all the results omerbasket lists can be consistent with a geographical variance theory.
The fact of CDC failing to detect WPI positive samples does show that geographical variance can't possibly be the whole story though - there have to be a few dodgy tests in there as well. But the CDC's, of course, was "designed not to detect"
Failures by CDC and McClure can easily be added to the theory of geographical variance I would have thought. I wonder how it would all stack up with the prostate cancer studies by geographical variance. I suspect there's no way to be sure just based on a crude analysis: you would have to go right down to the detail of everything, primer sets, exactly where samples were actually drawn from, genetic sequences of all the different strains, where the relevant mice live, everything. Maybe that's what they're all feverishly crunching on behind the scenes...
It would be funny if it turned out that the virus
can't swim after all...
But I'll forget about that if George assures me I can rule out that line of thinking...
Two interesting tidbits I thought. First there is a lot of information about the cross overs in the P and X MLV's. More or less XMRV is P/X variants of the original endogenous P/X-MLV's. So in effect she is saying Lo and Alter found XMRV and WPI found P/X-MLV's since in this case XMRV is the collimation of that family tree. Pretty cool that's on pages 20 and 21.
Firstly, I just have to ask if all this stuff supports my comments a couple of months ago that the "P-MLVs" might turn out to be "X" and "XMRV" might turn out to be "P", because as novel viruses and with lots of mice species out there, until you've tried infecting them all you don't actually know whether they really are P or X. That seems almost like what I'm reading here. If it is, I'll just throw in a little "told you so" and move on...
Second...George your comment here about the cross-overs seems to say that this might resolve the dispute over whether Lo/Alter really was a confirmation of WPI. Is it possible that the information in this paper clarifies that Lo/Alter really was a true independent verification of WPI, and that the apparent difference between the sequences detected is now explained? If there is now enough detail in this info to say that, then perhaps we now have our independent confirmation?!
This part I thought was interesting because of the interferon which may be why a synthetic interferon works when regular interferon doesn't and the part about XMRV inhibiting the APOBEC3 antiviral pathway. Now I've seen a couple of papers that say that APOBEC3 inhibits XMRV but this is the first I seen that XMRV inhibits APOBEC3 which makes me wonder if I either read the earlier Bishop papers incorrectly or if there are other papers out there floating around that haven't made the publishers yet.
My recollection was that APOBEC3 inhibits XMRV but that later work suggested it wasn't doing so in practice in one PC study. I may have got that wrong; the second set of info again made the picture look more complicated.
If they both inhibit each other, which appears to be pretty clear, then are we looking at a kind of front line in the war here?
The infection of many different species is clearly very significant though, and of course it does fit well with so much that we've talked about in the past. I note that cats are pretty susceptible...again, just as I thought...
Contamination theories are looking a bit thin these days eh?