LOCUS NC_007815 8185 bp ss-RNA linear VRL 08-DEC-2008
DEFINITION Xenotropic MuLV-related virus VP62, complete genome.
KEYWORDS .
SOURCE Xenotropic MuLV-related virus VP62
ORGANISM
Xenotropic MuLV-related virus VP62
Viruses; Retro-transcribing viruses; Retroviridae;
Orthoretrovirinae; Gammaretrovirus.
REFERENCE 1 (bases 1 to 8185)
AUTHORS Urisman,A., Molinaro,R.J., Fischer,N., Plummer,S.J., Casey,G.,
Klein,E.A., Malathi,K., Magi-Galluzzi,C., Tubbs,R.R., Ganem,D.,
Silverman,R.H. and DeRisi,J.L.
TITLE Identification of a novel Gammaretrovirus in prostate tumors of
patients homozygous for R462Q RNASEL variant
/db_xref="GeneID:
3964423"
/translation="MGQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWP
TFNVGWPQDGTFNLGVISQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPFVS
PKPPPLPTAPVLPPGPSAQPPSRSALYPALTPSIKSKPPKPQVLPDSGGPLIDLLTED
PPPYGAQPSSSARENNEEEAATTSEVSPPSPMVSRLRGRRDPPAADSTTSQAFPLRMG
GDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLL
TGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQL
LLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVS
MSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRREIEEKE
ERRRAEDEQRERERDRRRHREMSKLLATVVIGQRQDRQGGERRRPQLDKDQCAYCKEK
GHWAKDCPKKPRGPRGPRPQTSLLTLGDXGGQGQEPPPEPRITLKVGGQPVTFLVDTG
AQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDCPYPL
LGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVLTVNIEDEYWLHDTRKEPDVPLGSTW
LSDFLQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLD
QGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPP
SHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLF
DEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGNLGYRASAK
KAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIP
GFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEK
QGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKNAGKLTMGQP
LVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEK
EAPHDCLEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVI
WARALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLT
SEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA
VLETSTLLIEDSTPYTPPHFHYTETDLKRLRELGATYNQTKGYWVLQGKPVMPDQSVF
ELLDSLHRLTHLSPQKMKALLDREESPYYMLNRDRTIQYVTETCTACAQVNASKAKIG
AGVRVRGHRPGTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKK
LLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNR
TIKETLTKLTLASGTRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPE
MSKLTNSPSLQAHLQALQAVQQEVWKPLAAAYQDQLDQPVIPHPFRVGDAVWVRRHQT
KNLEPRWKGPYTVLLTTPTALKVDGISAWIHAAHVKAATTPPAGTAWKVQRSQNPLKI
RLTRGAP"
gene 613..2223
/gene="gag"
/locus_tag="XMVV62_gp3"
/db_xref="GeneID:
3964422"
CDS 613..2223
/gene="gag"
/locus_tag="XMVV62_gp3"
/codon_start=1
/product="putative gag polyprotein"
/protein_id="
YP_512362.1"
/db_xref="GI:89889046"
/db_xref="GeneID:
3964422"
/translation="MGQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWP
TFNVGWPQDGTFNLGVISQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPFVS
PKPPPLPTAPVLPPGPSAQPPSRSALYPALTPSIKSKPPKPQVLPDSGGPLIDLLTED
PPPYGAQPSSSARENNEEEAATTSEVSPPSPMVSRLRGRRDPPAADSTTSQAFPLRMG
GDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLL
TGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQL
LLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVS
MSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRREIEEKE
ERRRAEDEQRERERDRRRHREMSKLLATVVIGQRQDRQGGERRRPQLDKDQCAYCKEK
GHWAKDCPKKPRGPRGPRPQTSLLTLGD"
misc_feature 5479..5487
/note="splice acceptor"
gene 5754..7691
/gene="env"
/locus_tag="XMVV62_gp4"
/db_xref="GeneID:
3964424"
CDS 5754..7691
/gene="env"
/locus_tag="XMVV62_gp4"
/codon_start=1
/product="putative envelope polyprotein"
/protein_id="
YP_512363.1"
/db_xref="GI:89889048"
/db_xref="GeneID:
3964424"
/translation="MESPAFSKPLKDKINPWGPLIIMGILVRAGASVQRDSPHQVFNV
TWKITNLMTGQTANATSLLGTMTDTFPKLYFDLCDLVGDNWDDPEPDIGDGCRSPGGR
KRTRLYDFYVCPGHTVLTGCGGPREGYCGKWGCETTGQAYWKPSSSWDLISLKRGNTP
KGQGPCFDSSVGSGSIQGATPGGRCNPLVLEFTDAGKRASWDAPKTWGLRLYRSTGAD
PVTLFSLTRQVLNVGPRVPIGPNPVITEQLPPSQPVQIMLPRTPRPPPSGAASMVPGA
PPPSQQPGTGDRLLNLVEGAYLALNLTSPDKTQECWLCLVSGPPYYEGVAVLGTYSNH
TSAPANCSVTSQHKLTLSEVTGQGLCIGAVPKTHQALCNTTQKTSDGSYYLASPAGTI
WACSTGLTPCLSTTVLNLTTDYCVLVELWPKVTYHSPNYVYGQFEKKTKYKREPVSLT
LALLLGGLTMGGIAAGVGTGTTALVATKQFEQLQAAIHTDLGALEKSVSALEKSLTSL
SEVVLQNRRGLDLLFLKEGGLCAALKEECCFYADHTGVVRDSMAKLRERLNQRQKLFE
SGQGWFEGLFNRSPWFTTLISTIMGPLIVLLLILLFGPCILNRLVQFVKDRISVVQAL
VLTQQYHQLKSIDPEEVESRE"
LTR 7726..8184
/locus_tag="XMVV62_gp1"
/note="3' LTR"
repeat_region 7726..8115
/note="U3"
protein_bind 7915..7929
/locus_tag="XMVV62_gp1"
/note="androgen response element (ARE)"
/bound_moiety="androgen"
CAAT_signal 8027..8031
/locus_tag="XMVV62_gp1"
TATA_signal 8084..8090
/locus_tag="XMVV62_gp1"
repeat_region 8116..8184
/note="R"
polyA_signal 8162..8167
/locus_tag="XMVV62_gp1"
polyA_site 8185
/locus_tag="XMVV62_gp1"
ORIGIN
1 gcgccagtca tccgatagac tgagtcgccc gggtacccgt gttcccaata aagccttttg
61 ctgtttgcat ccgaagcgtg gcctcgctgt tccttgggag ggtctcctca gagtgattga
121 ctacccagct cgggggtctt tcatttgggg gctcgtccgg gattcggaga cccccgccca
181 gggaccaccg acccaccgtc gggaggtaag ccggccggcg atcgttttgt ctttgtctct
241 gtctttgtgc gtgtgtgtgt gtgccggcat ctaatcctcg cgcctgcgtc tgaatctgta
301 ctagttagct aactagatct gtatctggcg gttccgcgga agaactgacg agttcgtatt
361 cccggccgca gccctgggag acgtcccagc ggcctcgggg gcccgttttg tggcccattc
421 tgtatcagtt aacctacccg agtcggactt tttggagtgg ctttgttggg ggacgagaga
481 cagagacact tcccgccccc gtctgaattt ttgctttcgg ttttacgccg aaaccgcgcc
541 gcgcgtctga tttgttttgt tgttcttctg ttcttcgtta gttttcttct gtctttaagt
601 gttctcgaga tcatgggaca gaccgtaact acccctctga gtctaacctt gcagcactgg
661 ggagatgtcc agcgcattgc atccaaccag tctgtggatg tcaagaagag gcgctgggtt
721 accttctgtt ccgccgaatg gccaactttc aatgtaggat ggcctcagga tggtactttt
781 aatttaggtg ttatctctca ggtcaagtct agagtgtttt gtcctggtcc ccacggacac
841 ccggatcagg tcccatatat cgtcacctgg gaggcacttg cctatgaccc ccctccgtgg
901 gtcaaaccgt ttgtctctcc taaaccccct cctttaccga cagctcccgt cctcccgccc
961 ggtccttctg cgcaacctcc gtcccgatct gccctttacc ctgcccttac cccctctata
1021 aagtccaaac ctcctaagcc ccaggttctc cctgatagcg gcggacctct cattgacctt
1081 ctcacagagg atcccccgcc gtacggagca caaccttcct cctctgccag ggagaacaat
1141 gaagaagagg cggccaccac ctccgaggtt tccccccctt ctcccatggt gtctcgactg
1201 cggggaagga gagaccctcc cgcagcggac tccaccacct cccaggcatt cccactccgc
1261 atggggggag atggccagct tcagtactgg ccgttttcct cctctgattt atataattgg
1321 aaaaataata acccttcctt ttctgaagat ccaggtaaat tgacggcctt gattgagtcc
1381 gtcctcatca cccaccagcc cacctgggac gactgtcagc agttgttggg gaccctgctg
1441 accggagaag aaaagcagcg ggtgctccta gaggctagaa aggcagtccg gggcaatgat
1501 ggacgcccca ctcagttgcc taatgaagtc aatgctgctt ttccccttga gcgccccgat
1561 tgggattaca ccactacaga aggtaggaac cacctagtcc tctaccgcca gttgctctta
1621 gcgggtctcc aaaacgcggg caggagcccc accaatttgg ccaaggtaaa agggataacc
1681 cagggaccta atgagtctcc ctcagccttt ttagagagac tcaaggaggc ctatcgcagg
1741 tacactcctt atgaccctga ggacccaggg caagaaacca atgtgtccat gtcattcatc
1801 tggcagtctg ccccggatat cggacgaaag ttagagcggt tagaagattt aaagagcaag
1861 accttaggag acttagtgag ggaagctgaa aagatcttta ataagcgaga aaccccggaa
1921 gaaagagagg aacgtatcag gagagaaata gaggaaaaag aagaacgccg tagggcagag
1981 gatgagcaga gagagagaga aagggaccgc agaagacata gagagatgag caagctcttg
2041 gccactgtag ttattggtca gagacaggat agacaggggg gagagcggag gaggccccaa
2101 cttgataagg accaatgcgc ctactgcaaa gaaaagggac actgggctaa ggactgccca
2161 aagaagccac gagggccccg aggaccgagg ccccagacct ccctcctgac cttaggtgac
2221 tagggaggtc agggtcagga gcccccccct gaacccagga taaccctcaa agtcgggggg
2281 caacccgtca ccttcctggt agatactggg gcccaacact ccgtgctgac ccaaaatcct
2341 ggacccctaa gtgacaagtc tgcctgggtc caaggggcta ctggaggaaa gcggtatcgc
2401 tggaccacgg atcgcaaagt acatctggct accggtaagg tcacccactc tttcctccat
2461 gtaccagact gcccctatcc tctgctagga agagacttgc tgactaaact aaaagcccaa
2521 atccactttg agggatcagg agctcaggtt gtgggaccga tgggacagcc cctgcaagtg
2581 ctgacagtaa acatagaaga tgagtattgg ctacatgata ccaggaaaga gccagatgtt
2641 cctctagggt ccacatggct ttctgatttc cttcaggcct gggcggaaac cgggggcatg
2701 ggactggcag ttcgccaagc tcctctgatc atacctctga aggcaacctc tacccccgtg
2761 tccataaaac aataccccat gtcacaagaa gccagactgg ggatcaagcc ccacatacag
2821 aggctgttgg accagggaat actggtaccc tgccagtccc cctggaacac gcccctgcta
2881 cccgttaaga aaccagggac taatgattat aggcctgtcc aggatctgag agaagtcaac
2941 aagcgggtgg aagacatcca ccccaccgtg cccaaccctt acaacctctt gagcgggctc
3001 ccaccgtccc accagtggta cactgtgctt gatttaaagg atgccttttt ctgcctgaga
3061 ctccacccca ccagtcagcc tctcttcgcc tttgagtgga gagatccaga gatgggaatc
3121 tcaggacaac tgacctggac cagactccca cagggtttca aaaacagtcc caccctgttt
3181 gatgaggcac tgcacagaga cctagcagat ttccggatcc agcacccaga cttgatcctg
3241 ctacagtacg tggatgactt actgctggcc gccacttctg agcaagactg ccaacgaggt
3301 actcgggccc tattacaaac cctagggaac ctcgggtatc gggcctcggc caagaaagcc
3361 caaatttgcc agaaacaggt caagtatctg gggtatctcc taaaagaggg acagagatgg
3421 ctgactgagg ccagaaaaga gactgtgatg gggcagccca ctccgaagac ccctcgacaa
3481 ctaagggagt tcctagggac ggcaggcttc tgtcgcctct ggatccctgg gtttgcagaa
3541 atggcagccc ccttgtaccc tcttaccaaa acggggactc tgtttaattg gggcccagac
3601 cagcaaaagg cctatcaaga aatcaaacag gctcttctaa ctgcccccgc cctgggattg
3661 ccagatttga ctaagccctt tgaactcttt gtcgacgaga agcagggcta cgccaaaggc
3721 gtcctaacgc aaaaactggg accttggcgt cggcctgtgg cctacctgtc caaaaagcta
3781 gacccagtgg cagctgggtg gcccccttgc ctacggatgg tagcagccat tgccgttctg
3841 acaaaaaatg caggcaagct aactatggga cagccgctag tcattctggc cccccatgcg
3901 gtagaagcac tggtcaaaca accccctgac cgttggctat ccaatgcccg catgacccac
3961 tatcaggcaa tgctcctgga tacagaccgg gttcagttcg gaccggtggt ggccctcaac
4021 ccggccaccc tgctccccct accggaaaag gaagcccccc atgactgcct cgagatcttg
4081 gctgagacgc acggaaccag accggacctc acggaccagc ccatcccaga cgctgattac
4141 acttggtaca cagatggaag cagcttccta caagaaggac aacggagagc tggagcagcg
4201 gtgactactg agaccgaggt aatctgggcg agggctctgc cggctggaac atccgcccaa
4261 cgagccgaac tgatagcact cacccaagcc ttaaagatgg cagaaggtaa gaagctaaat
4321 gtttacactg atagccgcta tgccttcgcc acggcccatg tccatggaga aatatatagg
4381 aggcgagggt tgctgacctc agaaggcaga gaaattaaaa acaagaacga gatcttggcc
4441 ttgctaaaag ctctctttct gcccaaacga cttagtataa ttcactgtcc aggacatcaa
4501 aaaggaaaca gtgctgaggc cagaggcaac cgtatggcag atcaagcagc ccgagaggca
4561 gccatgaagg cagttctaga aacctctaca ctcctcatag aggactcaac cccgtatacg
4621 cctccccatt tccattacac cgaaacagat ctcaaaagac tacgggaact gggagccacc
4681 tacaatcaga caaaaggata ttgggtccta caaggcaaac ctgtgatgcc cgatcagtcc
4741 gtgtttgaac tgttagactc cctacacaga ctcacccatc tgagccctca aaagatgaag
4801 gcactcctcg acagagaaga aagcccctac tacatgttaa accgggacag aactatccag
4861 tatgtgactg agacctgcac cgcctgtgcc caagtaaatg ccagcaaagc caaaattggg
4921 gcaggggtgc gagtacgcgg acatcggcca ggcacccatt gggaagttga tttcacggaa
4981 gtaaagccag gactgtatgg gtacaagtac ctcctagtgt ttgtagacac cttctctggc
5041 tgggtagagg cattcccgac caagcgggaa actgccaagg tcgtgtccaa aaagctgtta
5101 gaagacattt ttccgagatt tggaatgccg caggtattgg gatctgataa cgggcctgcc
5161 ttcgcctccc aggtaagtca gtcagtggcc gatttactgg ggatcgattg gaagttacat
5221 tgtgcttata gaccccagag ttcaggacag gtagaaagaa tgaatagaac aattaaggag
5281 actttgacca aattaacgct tgcatctggc actagagact gggtactcct actcccctta
5341 gccctctacc gagcccggaa tactccgggc ccccacggac tgactccgta tgaaattctg
5401 tatggggcac ccccgcccct tgtcaatttt catgatcctg aaatgtcaaa gttaactaat
5461 agtccctctc tccaagctca cttacaggcc ctccaagcag tacaacaaga ggtctggaag
5521 ccgctggccg ctgcttatca ggaccagcta gatcagccag tgataccaca ccccttccgt
5581 gtcggtgacg ccgtgtgggt acgccggcac cagactaaga acttagaacc tcgctggaaa
5641 ggaccctaca ccgtcctgct gacaaccccc accgctctca aagtagacgg catctctgcg
5701 tggatacacg ccgctcacgt aaaggcggcg acaactcctc cggccggaac agcatggaaa
5761 gtccagcgtt ctcaaaaccc cttaaagata agattaaccc gtggggcccc ctgataatta
5821 tggggatctt ggtgagggca ggagcctcag tacaacgtga cagccctcac caggtcttta
5881 atgtcacttg gaaaattacc aacctaatga caggacaaac agctaatgct acctccctcc
5941 tggggacgat gacagacact ttccctaaac tatattttga cttgtgtgat ttagttggag
6001 acaactggga tgacccggaa cccgatattg gagatggttg ccgctctccc gggggaagaa
6061 aaaggacaag actatatgat ttctatgttt gccccggtca tactgtatta acagggtgtg
6121 gagggccgag agagggctac tgtggcaaat ggggatgtga gaccactgga caggcatact
6181 ggaagccatc atcatcatgg gacctaattt cccttaagcg aggaaacact cctaagggtc
6241 agggcccctg ttttgattcc tcagtgggct ccggtagcat ccagggtgcc acaccggggg
6301 gtcgatgcaa ccccctagtc ctagaattca ctgacgcggg taaaagggcc agctgggatg
6361 cccccaaaac atggggacta agactgtatc gatccactgg ggccgacccg gtgaccctgt
6421 tctctctgac ccgccaggtc ctcaatgtag ggccccgcgt ccccattggg cctaatcccg
6481 tgatcactga acagctaccc ccctcccaac ccgtgcagat catgctcccc aggactcctc
6541 gtcctcctcc ttcaggcgcg gcctctatgg tgcctggggc tcccccgcct tctcaacaac
6601 ctgggacggg agacaggctg ctaaacctgg tagaaggagc ctacctagcc ctcaacctca
6661 ccagtcccga caaaacccaa gagtgctggc tgtgtctagt atcgggaccc ccctactacg
6721 aaggggtggc cgtcctaggt acttactcca accatacctc tgccccggct aactgctccg
6781 tgacctccca acacaagctg accctgtccg aagtgaccgg gcagggactc tgcataggag
6841 cagttcccaa aacccatcag gccctgtgta ataccaccca gaagacgagc gacgggtcct
6901 actatttggc ctctcccgcc gggaccattt gggcttgcag caccgggctc actccctgtc
6961 tatctactac tgtgcttaac ttaaccactg attactgtgt cctggttgaa ctctggccaa
7021 aggtaaccta ccactcccct aattatgttt atggccagtt tgaaaagaaa actaaatata
7081 aaagagagcc ggtgtcatta actctggccc tgctgttggg aggacttact atgggcggca
7141 tagctgcagg agttggaaca gggactacag ccctagtggc caccaaacaa ttcgagcagc
7201 tccaggcagc catacataca gaccttgggg ccttagaaaa atcagtcagt gccctagaaa
7261 agtctctgac ctcgttgtct gaggtggtcc tacagaaccg gaggggatta gatctactgt
7321 tcctaaaaga aggaggatta tgtgctgccc taaaagaaga atgctgtttt tacgcggacc
7381 acactggcgt agtaagagat agcatggcaa agctaagaga aaggttaaac cagagacaaa
7441 aattgttcga atcaggacaa gggtggtttg agggactgtt taacaggtcc ccatggttca
7501 cgaccctgat atccaccatt atgggccctc tgatagtact tttattaatc ctactcttcg
7561 gaccctgtat tctcaaccgc ttggtccagt ttgtaaaaga cagaatttcg gtagtgcagg
7621 ccctggttct gacccaacag tatcaccaac tcaaatcaat agatccagaa gaagtggaat
7681 cacgtgaata aaagatttta ttcagtttcc agaaagaggg gggaatgaaa gaccccacca
7741 taaggcttag cacgctagct acagtaacgc cattttgcaa ggcatggaaa agtaccagag
7801 ctgagttctc aaaagttaca aggaagttta attaaagaat aaggctgaat aacactggga
7861 caggggccaa acaggatatc tgtagtcagg cacctgggcc ccggctcagg gccaagaaca
7921 gatggtcctc agataaagcg aaactaacaa cagtttctgg aaagtcccac ctcagtttca
7981 agttccccaa aagaccggga aataccccaa gccttattta aactaaccaa tcagctcgct
8041 tctcgcttct gtacccgcgc tttttgctcc ccagtcctag ccctataaaa aaggggtaag
8101 aactccacac tcggcgcgcc agtcatccga tagactgagt cgcccgggta cccgtgttcc
8161 caataaagcc ttttgctgtt tgcaa
or go to
http://www.ncbi.nlm.nih.gov/nuccore/NC_007815