It's hard to guess exactly, because they don't have a GSTT1-null group which is GSTM1+. But in table 3, the "basal fold change" after eating the veggies is 1.35. So it sounds like CYP1A2 activity is increasing by 35%. Because there doesn't seem to be any significant variation based on the version of CYP1A2 rs762551, GSTT1, or GSTM1, all of the effect seems to come from the food, regardless of genotype.
So essentially they're saying that eating the 2C diet results in a 24-25% increase of CYP1A2 activity for everyone. While there is a small difference between the GSTT1 positive/null and GSTM1 positive/null groups, it probably isn't significant, due to the small sample size.
Yes, it's the daily intake. They clarify that a bit here: